1. Hu, Y., Satten, G.A., Hu, Y.J.*, 2022, LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control, Proceedings of the National Academy of Sciences, 119, e2122788119
2. Zhu, Z., Satten, G.A., Mitchell, C., Hu, Y. J.*, 2021, Analyzing matched sets of microbiome data using the LDM and PERMANOVA, Microbiome, 9, https://doi.org/10.1186/s40168-021-01034-9
3. Li, Y., Hu, Y.J.*, Satten, G.A., 2020, A Bottom-up Approach to Testing Hypotheses That Have a Branching Tree Dependence Structure, with Error Rate Control, Journal of American Statistical Association, DOI: 10.1080/01621459.2020.1799811
4. Hu, Y.J.*, Satten, G.A., 2020, Testing hypotheses about microbiome using the linear decomposition model (LDM), Bioinformatics, 36, 4106-4115
5. Hu, Y. J.*, Liao, P., Johnston, H. R., Allen, A. S., and Satten, G. A., 2016, Testing rare-variant association without calling genotypes allows for systematic differences in sequencing between cases and controls, PLoS Genetics, https://doi.org/10.1371/journal.pgen.1006040
6. Hu, Y. J.*, Lin, D. Y., Sun, W., and Zeng, D. , 2014, A Likelihood-Based Framework for Association Analysis of Allele-Specific Copy Numbers, Journal of American Statistical Association, 109, 1533-1545
7. Hu, Y. J., Li, Y., Auer, P. L., and Lin, D. Y., 2014, Integrative Analysis of Sequencing and Array Genotype Data for Discovering Disease Associations with Rare Mutations, Proceedings of National Academy of Sciences, 112, 1019-1024
8. Hu, Y. J., Sun, W., Tzeng, J. Y., Perou, C. M., 2014, Proper use of allele-specific expression improves statistical power for cis-eQTL mapping with RNA-seq data, Journal of American Statistical Association, 110, 962-974
9. Hu, Y. J., Berndt, S. I., Gustafsson, S., Ganna, A., Genetic Investigation of ANthropometric Traits (GIANT) Consortium, Hirschhorn, J., North, K. E., Ingelsson, E., and Lin, D. Y., 2013, Meta-Analysis of Gene-Level Associations With Rare Variants Based on Single-Variant Statistics, American Journal of Human Genetics, 93, 236-248
10. Hu, Y. J., Lin, D. Y., Zeng, D., 2010, A General Framework for Studying Genetic Effects and Gene-Environment Interactions with Missing Data, Biostatistics, 11, 583-598
