1. C. Zhang and F. A. Matsen IV, Variational Bayesian Phylogenetic Inference. In Proceedings of the 7th International Conference on Learning Representations, 2019.
2. C. Zhang and F. A. Matsen IV, Generalizing Tree Probability Estimation via Bayesian Networks. In Advances in Neural Information Processing Systems, 2018.
3. C. Zhang, B. Shahbaba and H. K. Zhao, Variational Hamiltonian Monte Carlo via Score Matching. Bayesian Analysis, 13(2), 486—506, 2018.
4. V. Dinh*, A. Bilge*, C. Zhang*, and F. A. Matsen IV, Probabilistic Path Hamiltonian Monte Carlo. In Proceedings of the 34th International Conference on Machine Learning. 1009—1018, 2017.
5. C. Zhang, B. Shahbaba and H. K. Zhao, Hamiltonian Monte Carlo Acceleration Using Surrogate Functions with Random Bases. Statistics and Computing, 27(6), 1473—1490, 2017.
6. Zhang, Cheng. Improved Variational Bayesian Phylogenetic Inference with Normalizing Flows. NeurIPS, 2020.
7. Zhang, Cheng; Dinh, Vu and Matsen, Frederick A. Nonbifurcating phylogenetic tree inference via the adaptive LASSO . Journal of the American Statistical Association, 1-16, 2020.
8. Zhang, Cheng; Vu Dinh; Frederick A. Matsen IV. Non-bifurcating phylogenetic tree inference via the adaptive LASSO. Journal of the American Statistical Association , 116(534), 858-873,2021.
9. Cheng Zhang, Frederick A. Matsen IV.Variational Bayesian Phylogenetic Inference. In Proceedings of the 7th International Conference on Learning Representations (ICLR 2019)